CraftBukkit is not Vanilla server, and as such any mods designed for Vanilla Minecraft will not work out of the box. They need porting. These people do the ports, and you can download a ready-modded craftbukkit from here: http://mcportcentral.co.za/wiki/index.php?title=Ports_for_1.2.5
You are using ModLoaderMp. ModLoaderMp conflicts on the server side of Forge. Try reinstalling, but omitting the installation of ModLoaderMp on client and server side.
Which version of Buildcraft are you running? BC3 is not SMP compatible at this moment in time.
Additionally, in future give us your relevant ModLoader.txt and spoiler any console messages.