Thanks so much for your help! I've already got everything working the way I want it in eclipse, so I might just make a python file that deletes the contents of the bin file, then just repopulates it with the resources from the "src" folder. It's like 10 minutes of coding for me, not even, so I'll just do that.
To anyone that reads this like a year down the line, the solution is to delete the contents of the "bin" file, then put the contents of your "src" file into your "bin" file.
Thanks for your help Wintersky20, and I hope you have a wonderful day!